lookupAlignment: Show alignment in human readable format.

Description Usage Arguments Value Examples

Description

Prints alignments in blast-like style for human examination.

Usage

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lookupAlignment(x, ID, read_id = 1)

Arguments

x

(AlignmentsExperimentSet)

ID

(string) Experiment Identifier

read_id

(numeric) Read Identifier. Reads are sorted by frequency. Defaults to 1, most abundant read.

Value

(print to view)

Examples

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# load example object
file_path <- system.file("extdata", "results", "alignments",
                         "AlignmentsExperimentSet.rds", package = "amplican")
aln <- readRDS(file_path)
# look at most frequent reads aligned from experiment ID_1
lookupAlignment(aln, "ID_1")

amplican documentation built on July 8, 2020, 9:22 p.m.