Description Usage Arguments Value Examples
Prints alignments in blast-like style for human examination.
1 | lookupAlignment(x, ID, read_id = 1)
|
x |
(AlignmentsExperimentSet) |
ID |
(string) Experiment Identifier |
read_id |
(numeric) Read Identifier. Reads are sorted by frequency. Defaults to 1, most abundant read. |
(print to view)
1 2 3 4 5 6 | # load example object
file_path <- system.file("extdata", "results", "alignments",
"AlignmentsExperimentSet.rds", package = "amplican")
aln <- readRDS(file_path)
# look at most frequent reads aligned from experiment ID_1
lookupAlignment(aln, "ID_1")
|
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