extractEvents: Extract AlignmentsExperimentSet events into data.frame.
In amplican: Automated analysis of CRISPR experiments

Description Usage Arguments Value Examples

Extracts events (insertions, deletions, mismatches) from alignments into data.frame. Can use multiple cores as process is quite slow. All events are relative towards forward strand. "-" in strand column indicates which events were from reverse reads.

1	extractEvents(object, use_parallel = FALSE)

`object`	(AlignmentsExperimentSet)
`use_parallel`	(boolean) Set to TRUE, if you have registered multicore back-end with `register`.

(data.frame) Compatible with GRanges style.

file_path <- system.file("extdata", "results", "alignments",
                         "AlignmentsExperimentSet.rds", package = "amplican")
aln <- readRDS(file_path)
extractEvents(aln)