Usefull and needed for barcode reports.
(character or vector of characters) Forward reads.
(character or vector of characters) Will be reverse complemented before alignment.
Vector with alignments ready to be printed.
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# load example data unassigned_file <- system.file('extdata', 'results', 'alignments', 'unassigned_reads.csv', package = 'amplican') unassigned <- data.table::setDF(data.table::fread(unassigned_file)) # sort by frequency unassigned <- unassigned[order(unassigned$BarcodeFrequency, decreasing = TRUE), ] # print alignment of most frequent unassigned reads cat(amplican_print_reads(unassigned[1, 'Forward'], unassigned[1, 'Reverse']), sep = "\n")
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