gmapR: An R interface to the GMAP/GSNAP/GSTRUCT suite
Version 1.20.0

GSNAP and GMAP are a pair of tools to align short-read data written by Tom Wu. This package provides convenience methods to work with GMAP and GSNAP from within R. In addition, it provides methods to tally alignment results on a per-nucleotide basis using the bam_tally tool.

Getting started

Package details

AuthorCory Barr, Thomas Wu, Michael Lawrence
Bioconductor views Alignment
MaintainerMichael Lawrence <[email protected]>
LicenseArtistic-2.0
Version1.20.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("gmapR")

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gmapR documentation built on Nov. 17, 2017, 10:11 a.m.