TP53Genome: Demo genome around TP53
In gmapR: An R interface to the GMAP/GSNAP/GSTRUCT suite
Description
Usage
Value
Author(s)
Examples
Description
Returns a GmapGenome object consisting of the
UCSC hg19 sequence centered on the region of the TP53 gene, with 1 Mb
flanking sequence on each side. This is intended as a
test/demonstration genome and can be used, e.g., in conjunction with
the LungCancerLines data package.
Usage
1
2
TP53Genome()
TP53Which()
Value
For TP53Genome, a GmapGenome object. If this is the
first time the user has run this function, a side-effect will be the
generation of an on-disk genome index, under the name
“TP53_demo_VERSION” in the default genome directory, where
VERSION is the version of the TxDb package providing the bounds
of the P53 gene.
For TP53Which, a GRanges of the extents of the TP53
gene, translated to the space of TP53Genome.
Author(s)
Michael Lawrence, Cory Barr
Examples
1
gmapR documentation built on Nov. 8, 2020, 5:29 p.m.
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Description Usage Value Author(s) Examples
Description
Returns a GmapGenome object consisting of the
UCSC hg19 sequence centered on the region of the TP53 gene, with 1 Mb
flanking sequence on each side. This is intended as a
test/demonstration genome and can be used, e.g., in conjunction with
the LungCancerLines data package.
Usage
1 2 | TP53Genome()
TP53Which()
|
Value
For TP53Genome, a GmapGenome object. If this is the
first time the user has run this function, a side-effect will be the
generation of an on-disk genome index, under the name
“TP53_demo_VERSION” in the default genome directory, where
VERSION is the version of the TxDb package providing the bounds
of the P53 gene.
For TP53Which, a GRanges of the extents of the TP53
gene, translated to the space of TP53Genome.
Author(s)
Michael Lawrence, Cory Barr
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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