Rbowtie: R bowtie wrapper

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Package details

AuthorFlorian Hahne, Anita Lerch, Michael B Stadler
Bioconductor views Alignment Sequencing
MaintainerMichael Stadler <michael.stadler@fmi.ch>
LicenseArtistic-2.0 | file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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Rbowtie documentation built on Nov. 8, 2020, 6:11 p.m.