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README.md
In Rbowtie: R bowtie wrapper
Rbowtie
The Rbowtie R package provides an R interface to the
bowtie short-read aligner by
Langmead et al. (2009), as well as to
SpliceMap by Au et al. (2010).
The package contains wrapper functions to create a genome index and to perform
the read alignment to the generated index. These are used by the
QuasR bioconductor package.
We recommend to use the QuasR package instead of using Rbowtie directly.
Source code
The source code for bowtie v1.2.3 was obtained from https://github.com/BenLangmead/bowtie/archive/v1.2.3.tar.gz on December 13, 2019. The folders genomes, reads, doc, indexes and scripts were not included into the package to reduce its size.
Software status
| Platforms | OS | R CMD check | Coverage |
|:----------------:|:----------------:|:----------------:|:----------------:|
| Travis CI | Linux | 
| 
|
| Appveyor | Windows | 
| |
| GitHub Actions | Linux/Windows/macOS | 
| |
| Bioc (devel) | Multiple | 
| |
| Bioc (release) | Multiple | 
| |
Try the Rbowtie package in your browser
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Rbowtie documentation built on Nov. 8, 2020, 6:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Rbowtie
The Rbowtie R package provides an R interface to the
bowtie short-read aligner by
Langmead et al. (2009), as well as to
SpliceMap by Au et al. (2010).
The package contains wrapper functions to create a genome index and to perform
the read alignment to the generated index. These are used by the
QuasR bioconductor package.
We recommend to use the QuasR package instead of using Rbowtie directly.
Source code
The source code for bowtie v1.2.3 was obtained from https://github.com/BenLangmead/bowtie/archive/v1.2.3.tar.gz on December 13, 2019. The folders genomes, reads, doc, indexes and scripts were not included into the package to reduce its size.
Software status
| Platforms | OS | R CMD check | Coverage |
|:----------------:|:----------------:|:----------------:|:----------------:|
| Travis CI | Linux | | |
| Appveyor | Windows | |
|
| GitHub Actions | Linux/Windows/macOS | | |
| Bioc (devel) | Multiple | | |
| Bioc (release) | Multiple | | |
Try the Rbowtie package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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