Rbowtie-package: R bowtie wrapper

In Rbowtie: R bowtie wrapper

Description

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool.

The package is used by the QuasR bioconductor package. We recommend to use QuasR instead of using Rbowtie directly. QuasR provides a simpler interface than Rbowtie and covers the whole analysis workflow of typical ultra-high throughput sequencing experiments, starting from the raw sequence reads, over pre-processing and alignment, up to quantification.

Details

See packageDescription('Rbowtie') for package details.

Author(s)

Florian Hahne, Anita Lerch, Michael B Stadler

See Also

bowtie, SpliceMap

Examples

## Not run: 
    example(bowtie)
    example(SpliceMap)

## End(Not run)

Rbowtie documentation built on Nov. 8, 2020, 6:11 p.m.