fchen365/surf: Statistical Utility for RBP (RNA binding protein) Functions

Advances in high-throughput profiling of RNA-binding proteins (RBPs) have resulted in CLIP-seq datasets coupled with transcriptome profiling by RNA-seq. However, analysis methods that integrate both types of data are lacking. We describe SURF, Statistical Utility for RBP Functions, for integrative analysis of large collections of CLIP-seq and RNA-seq data to identify alternative splicing (AS), alternative transcription initiation (ATI), and alternative polyadenylation (APA) events regulated by individual RBPs and elucidate protein-RNA interactions governing these events.

Getting started

Package details

Bioconductor views Alignment AlternativeSplicing Coverage DNASeq DataImport RNASeq Sequencing Transcription Visualization
URL https:github.com/fchen365/surf
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
fchen365/surf documentation built on May 13, 2021, 7:45 a.m.