annotateEvent: Annotate AS events (generate feature bins)

In fchen365/surf: Statistical Utility for RBP (RNA binding protein) Functions

Description

Annotate AS events (generate feature bins)

Usage

annotateEvent(
  isoPLas,
  cores = max(1, detectCores() - 2),
  min.event.length = 6,
  anno_ss = NULL,
  remove.duplicate = FALSE
)

Arguments

isoPLas	isoform parts list with AS events
cores	integer, number of computing cores to use.
min.event.length	numeric (positive), minimum length of a valid event.
anno_ss	a GRanges of start/stop codon, UTR, Selenocysteine, etc; used to exclude some interior events (i.e., SE/RI/A3SS/A5SS)
remove.duplicate	logical, whether (default to TRUE) to remove identical event duplicates (by keeping one).

Value

a surf object.

fchen365/surf documentation built on June 18, 2021, 12:02 p.m.