fat: Perform the functional association test (FAT)

In fchen365/surf: Statistical Utility for RBP (RNA binding protein) Functions

Description

This is a learning one unit of SURF. It trains a GLM model for the functional association of one RBP with one ATR event.

Usage

fat(data, min.size = 60, trim = 0.025)

Arguments

data	data.frame, contains training data for one RBP and one event type
min.size	integer, the minimum size of "reliable" training set, default to 60.
trim	numeric, the percentile used to trim the training data. This is useful in producing a more robust estimation of functional association.

Value

a data.frame that summarizes the FAT.

fchen365/surf documentation built on June 18, 2021, 12:02 p.m.