calculateAUC: Calculate AUC

Description Usage Arguments Value

View source: R/estimate.R

Description

Calculate AUC

Usage

1
calculateAUC(set, rankings, cores = 1, verbose = FALSE, ...)

Arguments

set

a list of sets (or signatures) to test. The sets should be provided as GeneSet, GeneSetCollection or character list.

rankings

'Rankings' created for this dataset with AUCell_buildRankings.

cores

integer, number of computing cores to use.

verbose

Should the function show progress messages? (TRUE / FALSE)

...

additional parameters for AUCell::AUCell_calcAUC.

Value

a SummarizedExperiment object.


fchen365/surf documentation built on June 18, 2021, 12:02 p.m.