fa.plot: Functional association plot

Description Usage Arguments Value

View source: R/help.R

Description

This function provides a ggplot implementation for functional association (FA) plot.

Usage

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fa.plot(
  object,
  plot.event = "all",
  trim = metadata(object)$trim,
  fdr.cutoff = 0.05
)

Arguments

object

a surf object from faseq or faseqFit or faseqInfer.

plot.event

character vector, event type wanted. In particular, "all" means all event types.

trim

numeric, trimming quantile. The head and tail trim/2 portion of the signal will be trimmed/ignored.

fdr.cutoff

numeric, threshold for adjusted p-value in functional association test.

Value

a ggplot object.


fchen365/surf documentation built on June 18, 2021, 12:02 p.m.