faseqFit: Functional Association using Sequencing data

In fchen365/surf: Statistical Utility for RBP (RNA binding protein) Functions

Description

This function performs functional association test (FAT). The null hypothesis of FAT is that there is no association between feature signals and differential ATR.

Usage

faseqFit(event, min.size = 60, trim = 0.025, verbose = FALSE)

Arguments

event	a surf object output by faseqCount.
min.size	integer, the minimum size of "reliable" training set, default to 60.
trim	numeric, the percentile used to trim the training data. This is useful in producing a more robust estimation of functional association.
verbose	logical, whether to print out progress information.

Value

a surf object with faseqResults slot updated.

fchen365/surf documentation built on June 18, 2021, 12:02 p.m.