RiboProfiling: Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3'UTR, and 5'UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

Package details

AuthorAlexandra Popa
Bioconductor views Alignment Coverage PrincipalComponent QualityControl RiboSeq Sequencing Software
MaintainerA. Popa <alexandra.mariela.popa@gmail.com>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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RiboProfiling documentation built on Nov. 8, 2020, 5:26 p.m.