histMatchLength: Histogram of match length distribution of reads.
In RiboProfiling: Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
Description
Usage
Arguments
Value
Examples
View source: R/histMatchLength.R
Description
Histogram of match length distribution of reads.
Usage
1
histMatchLength(aln, log10Transf = 0, titleHist)
Arguments
aln
A GAlignments object of the BAM mapping file.
log10Transf
A boolean. Either 0 (default) or 1 (log10).
titleHist
a character. The main title for the histogram.
Default - none.
Value
A list with 2 elements.
The first element:
a data.frame of the number of counts per match length distribution.
The second element in the list:
a ggplot2 histogram of the match length distribution.
Examples
1
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#starting from a GAlignment object
data(ctrlGAlignments)
aln <- ctrlGAlignments
#no log10 scaling
matchLenDistr <- histMatchLength(aln, 0)
#to plot the histogram
matchLenDistr[[2]]
RiboProfiling documentation built on Nov. 8, 2020, 5:26 p.m.
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Description Usage Arguments Value Examples
View source: R/histMatchLength.R
Description
Histogram of match length distribution of reads.
Usage
1 | histMatchLength(aln, log10Transf = 0, titleHist)
|
Arguments
aln |
A GAlignments object of the BAM mapping file. |
log10Transf |
A boolean. Either 0 (default) or 1 (log10). |
titleHist |
a character. The main title for the histogram. Default - none. |
Value
A list with 2 elements. The first element: a data.frame of the number of counts per match length distribution. The second element in the list: a ggplot2 histogram of the match length distribution.
Examples
1 2 3 4 5 6 7 | #starting from a GAlignment object
data(ctrlGAlignments)
aln <- ctrlGAlignments
#no log10 scaling
matchLenDistr <- histMatchLength(aln, 0)
#to plot the histogram
matchLenDistr[[2]]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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