ORFik: Open Reading Frames in Genomics

Tools for manipulation of RiboSeq, RNASeq and CageSeq data. ORFik is extremely fast through use of C, data.table and GenomicRanges. Package allows to reassign starts of the transcripts with the use of CageSeq data, automatic shifting of RiboSeq reads, finding of Open Reading Frames for whole genomes and much more.

Package details

AuthorHaakon Tjeldnes [aut, dtc], Kornel Labun [aut, cre, cph], Katarzyna Chyzynska [ctb, dtc], Evind Valen [ths, fnd]
Bioconductor views Alignment Coverage DataImport FunctionalGenomics ImmunoOncology RNASeq RiboSeq Sequencing Software
MaintainerKornel Labun <[email protected]>
LicenseMIT + file LICENSE
Version1.4.1
URL https://github.com/JokingHero/ORFik
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ORFik")

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ORFik documentation built on June 8, 2019, 2 a.m.