config: Read directory config for ORFik experiments

In ORFik: Open Reading Frames in Genomics

Description

Defines a folder for: 1. fastq files (raw_data)
2. bam files (processed data)
3. references (organism annotation and STAR index)

Usage

config(file = "~/Bio_data/ORFik_config.csv")

Arguments

file	file of config for ORFik, default: "~/Bio_data/ORFik_config.csv"

Details

Update or use another config using config.save() function.

Value

a named character vector of length 3

ORFik documentation built on March 27, 2021, 6 p.m.