correlation.plots: Correlation plots between all samples

Description Usage Arguments Value

Description

Get 2 correlation plots of raw counts and log2(count + 1) over selected region in: c("mrna", "leaders", "cds", "trailers")

Usage

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correlation.plots(
  df,
  output.dir,
  region = "mrna",
  type = "fpkm",
  height = 400,
  width = 400,
  size = 0.15
)

Arguments

df

an ORFik experiment

output.dir

directory to save to, 2 files named: cor_plot.png and cor_plot_log2.png

region

a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers)

type

which value to use, "fpkm", alternative "counts".

height

numeric, default 400 (in mm)

width

numeric, default 400 (in mm)

size

numeric, size of dots, default 0.15.

Value

invisible(NULL)


ORFik documentation built on March 27, 2021, 6 p.m.