correlation.plots: Correlation plots between all samples

In ORFik: Open Reading Frames in Genomics

Description

Get 2 correlation plots of raw counts and log2(count + 1) over selected region in: c("mrna", "leaders", "cds", "trailers")

Usage

correlation.plots(
  df,
  output.dir,
  region = "mrna",
  type = "fpkm",
  height = 400,
  width = 400,
  size = 0.15
)

Arguments

df	an ORFik experiment
output.dir	directory to save to, 2 files named: cor_plot.png and cor_plot_log2.png
region	a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers)
type	which value to use, "fpkm", alternative "counts".
height	numeric, default 400 (in mm)
width	numeric, default 400 (in mm)
size	numeric, size of dots, default 0.15.

Value

invisible(NULL)

ORFik documentation built on March 27, 2021, 6 p.m.