It will return same list of GRanges, but with metdata columns: trainscript_id - id of transcripts that overlap with each ORF gene_id - id of gene that this transcript belongs to isoform - for coding protein alignment in relation to cds on coresponding transcript, for non-coding transcripts alignment in relation to the transcript.
- GRanges or GRangesList object of your ORFs.
- Path to gtf file with annotations.
A GRanges object of your ORFs with metadata columns 'gene', 'transcript', isoform' and 'biotype'.
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