config.save: Save/update directory config for ORFik experiments

In ORFik: Open Reading Frames in Genomics

Description

Defines a folder for fastq files (raw_data), bam files (processed data) and references (organism annotation and STAR index)

Usage

config.save(
  file = "~/Bio_data/ORFik_config.csv",
  fastq.dir,
  bam.dir,
  reference.dir
)

Arguments

file	file of config for ORFik, default: "~/Bio_data/ORFik_config.csv"
fastq.dir	directory where ORFik puts fastq file directories, default: config()["fastq"]
bam.dir	directory where ORFik puts bam file directories, default: config()["bam"]
reference.dir	directory where ORFik puts reference file directories, default: config()["ref"]

Value

invisible(NULL), file saved to disc

ORFik documentation built on March 27, 2021, 6 p.m.