config.save: Save/update directory config for ORFik experiments

Description Usage Arguments Value

View source: R/utils_directory_config.R

Description

Defines a folder for fastq files (raw_data), bam files (processed data) and references (organism annotation and STAR index)

Usage

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config.save(
  file = "~/Bio_data/ORFik_config.csv",
  fastq.dir,
  bam.dir,
  reference.dir
)

Arguments

file

file of config for ORFik, default: "~/Bio_data/ORFik_config.csv"

fastq.dir

directory where ORFik puts fastq file directories, default: config()["fastq"]

bam.dir

directory where ORFik puts bam file directories, default: config()["bam"]

reference.dir

directory where ORFik puts reference file directories, default: config()["ref"]

Value

invisible(NULL), file saved to disc


ORFik documentation built on March 27, 2021, 6 p.m.