addCdsOnLeaderEnds: Extends leaders downstream

Description Usage Arguments Details Value See Also

View source: R/uORF_helpers.R

Description

When finding uORFs, often you want to allow them to end inside the cds.

Usage

1
addCdsOnLeaderEnds(fiveUTRs, cds, onlyFirstExon = FALSE)

Arguments

fiveUTRs

The 5' leader sequences as GRangesList

cds

If you want to extend 5' leaders downstream, to catch uorfs going into cds, include it.

onlyFirstExon

logical (F), include whole cds or only first exons.

Details

This is a simple way to do that

Value

a GRangesList of cds exons added to ends

See Also

Other uorfs: filterUORFs(), removeORFsWithSameStartAsCDS(), removeORFsWithSameStopAsCDS(), removeORFsWithStartInsideCDS(), removeORFsWithinCDS(), uORFSearchSpace()


ORFik documentation built on March 27, 2021, 6 p.m.