FastqCleaner: A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.

Package details

AuthorLeandro Roser [aut, cre], Fernán Agüero [aut], Daniel Sánchez [aut]
Bioconductor views QualityControl SangerSeq SequenceMatching Sequencing Software
MaintainerLeandro Roser <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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FastqCleaner documentation built on Nov. 8, 2020, 5:05 p.m.