Files in FastqCleaner

A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

src/cpp_base_content.cpp

src/cpp_which_true.cpp

src/Makevars.win

src/RcppExports.cpp

src/cpp_GC_content.cpp

src/Makevars

src/cpp_check_quality_threshold.cpp

src/cpp_create_stringvec.cpp

R/auxiliar.R R/seq_filter.R R/launch_fqc.R R/server_functions.R R/RcppExports.R R/matching.R R/adapter_filter.R R/qmean_filter.R R/roxygen.auxiliar.R R/complex_filter.R R/fixed_filter.R R/simulate.R R/unique_filter.R R/trim3q_filter.R R/n_filter.R R/length_filter.R R/plotObjects.R vignettes/Overview.Rmd

vignettes/images/Fig12.png

vignettes/images/Fig11.png

vignettes/images/Fig4.png

vignettes/images/Fig6.png

vignettes/images/Fig7.png

vignettes/images/Fig8.png

vignettes/images/Fig3.png

vignettes/images/Fig10.png

vignettes/images/Fig9.png

vignettes/images/Fig5.png

vignettes/images/Fig2.png

vignettes/images/Fig1.png

vignettes/index_files/MathJax.js

man/launch_fqc.Rd man/seq_names.Rd man/plotC.Rd man/adapter_filter.Rd man/qmean_filter.Rd man/plotA.Rd man/plotB.Rd man/asc2int.Rd man/plotD.Rd man/processingFunction_.Rd man/isNaturalNumber.Rd man/complex_filter.Rd man/random_qual.Rd man/plotH.Rd man/random_length.Rd man/plotF.Rd man/plotObjects.Rd man/matching.Rd man/int2asc.Rd man/plotE.Rd man/plotJ.Rd man/fixed_filter.Rd man/trim3q_filter.Rd man/length_filter.Rd man/n_filter.Rd man/check_encoding.Rd man/myPlot.Rd man/seq_filter.Rd man/unique_filter.Rd man/plotI.Rd man/create_cleanfunction_.Rd man/random_seq.Rd man/outputClean_.Rd man/check_onclick_.Rd man/plotG.Rd man/inject_letter_random.Rd man/create_uniform_width.Rd man/messageFun_.Rd tests/testthat.R tests/testthat/test-fixed_filter.R tests/testthat/test-length_filter.R tests/testthat/test-unique_filter.R tests/testthat/test-n_filter.R tests/testthat/test-matching.R tests/testthat/test-adapter_filter.R tests/testthat/test-trim3q_filter.R tests/testthat/test-complex_filter.R tests/testthat/test-qmean_filter.R tests/testthat/test-seq_filter.R inst/doc/Overview.Rmd inst/doc/Overview.pdf inst/doc/Overview.R inst/application/panel1.R inst/application/panel3.R inst/application/ui.R inst/application/panel2Input.R inst/application/server.R inst/application/panel3Input.R inst/application/panel2.R inst/application/panel1Input.R inst/application/global.R

inst/application/www/images/loading.gif

inst/application/www/images/icon.png

inst/application/www/images/github.svg

inst/application/www/images/pattern.png

inst/application/www/images/icon.svg

inst/application/www/images/icon2.gif

inst/application/www/images/help.svg

inst/application/www/scripts/highcharts.js

inst/application/www/scripts/offline-exporting.js

inst/application/www/scripts/exporting.js

inst/application/www/scripts/highcharts-more.js

inst/application/www/scripts/FqC_highcharts_style.js

inst/application/www/scripts/javascript.js

inst/application/www/scripts/jquery-3.1.0.min.js

inst/application/www/help/index.html

inst/application/www/help/docs/index.html

inst/application/www/help/docs/pkgdown.yml

inst/application/www/help/docs/LICENSE-text.html

inst/application/www/help/docs/docsearch.js

inst/application/www/help/docs/404.html

inst/application/www/help/docs/docsearch.css

inst/application/www/help/docs/authors.html

inst/application/www/help/docs/pkgdown.js

inst/application/www/help/docs/link.svg

inst/application/www/help/docs/jquery.sticky-kit.min.js

inst/application/www/help/docs/pkgdown.css

inst/application/www/help/docs/articles/index.html

inst/application/www/help/docs/articles/Overview.html

inst/application/www/help/docs/articles/images/Fig12.png

inst/application/www/help/docs/articles/images/Fig11.png

inst/application/www/help/docs/articles/images/Fig4.png

inst/application/www/help/docs/articles/images/Fig6.png

inst/application/www/help/docs/articles/images/Fig7.png

inst/application/www/help/docs/articles/images/Fig8.png

inst/application/www/help/docs/articles/images/Fig3.png

inst/application/www/help/docs/articles/images/Fig10.png

inst/application/www/help/docs/articles/images/Fig9.png

inst/application/www/help/docs/articles/images/Fig5.png

inst/application/www/help/docs/articles/images/Fig2.png

inst/application/www/help/docs/articles/images/Fig1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-12-1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-13-1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-14-1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-8-1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-7-1.png

inst/application/www/help/docs/articles/Overview_files/figure-html/unnamed-chunk-11-1.png

inst/application/www/help/docs/reference/adapter_filter.html

inst/application/www/help/docs/reference/plotG.html

inst/application/www/help/docs/reference/trim3q_filter.html

inst/application/www/help/docs/reference/index.html

inst/application/www/help/docs/reference/complex_filter.html

inst/application/www/help/docs/reference/unique_filter.html

inst/application/www/help/docs/reference/messageFun_.html

inst/application/www/help/docs/reference/random_seq.html

inst/application/www/help/docs/reference/n_filter.html

inst/application/www/help/docs/reference/random_length.html

inst/application/www/help/docs/reference/seq_filter.html

inst/application/www/help/docs/reference/check_encoding.html

inst/application/www/help/docs/reference/length_filter.html

inst/application/www/help/docs/reference/plotObjects.html

inst/application/www/help/docs/reference/matching.html

inst/application/www/help/docs/reference/inject_letter_random.html

inst/application/www/help/docs/reference/n_filter-1.png

inst/application/www/help/docs/reference/plotF.html

inst/application/www/help/docs/reference/seq_names.html

inst/application/www/help/docs/reference/random_qual.html

inst/application/www/help/docs/reference/int2asc.html

inst/application/www/help/docs/reference/myPlot.html

inst/application/www/help/docs/reference/create_uniform_width.html

inst/application/www/help/docs/reference/fixed_filter.html

inst/application/www/help/docs/reference/plotD.html

inst/application/www/help/docs/reference/complex_filter-1.png

inst/application/www/help/docs/reference/plotA.html

inst/application/www/help/docs/reference/qmean_filter.html

inst/application/www/help/docs/reference/create_cleanfunction_.html

inst/application/www/help/docs/reference/isNaturalNumber.html

inst/application/www/help/docs/reference/outputClean_.html

inst/application/www/help/docs/reference/plotC.html

inst/application/www/help/docs/reference/plotI.html

inst/application/www/help/docs/reference/check_onclick_.html

inst/application/www/help/docs/reference/n_filter-2.png

inst/application/www/help/docs/reference/plotH.html

inst/application/www/help/docs/reference/plotB.html

inst/application/www/help/docs/reference/launch_fqc.html

inst/application/www/help/docs/reference/processingFunction_.html

inst/application/www/help/docs/reference/plotJ.html

inst/application/www/help/docs/reference/plotE.html

inst/application/www/help/docs/reference/asc2int.html

inst/application/www/fonts/roboto/Roboto-Regular.ttf

inst/application/www/fonts/roboto/License.txt

inst/application/www/styles/flatly.css

inst/application/www/styles/myStyles.css

inst/application/www/styles/spinner.css

inst/application/www/styles/help.css

inst/application/www/styles/masterCss.css

inst/extdata/install.R

inst/include/cpp_check_logical_matrix.h

inst/rstudio/addins.dcf

FastqCleaner documentation built on Nov. 8, 2020, 5:05 p.m.