Man pages for FastqCleaner
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files

adapter_filterRemove full and partial adapters from a ShortReadQ object
asc2intASCII to integer
check_encodingCheck quality encoding
check_onclick_check onclick
complex_filterRemove sequences with low complexity
create_cleanfunction_create_cleanfunction_
create_uniform_widthCreate fastq/sequences/qualities with uniform width
fixed_filterRemove a fixed number of bases of a ShortReadQ object from 3'...
inject_letter_randomInject a letter in a set of sequences at random positions
int2ascInteger to ASCII
isNaturalNumberIs natural number
launch_fqcLaunch FastqCleaner application
length_filterFilter sequences of a FASTQ file by length
matchingRemove left and right full and partial patterns
messageFun_messageFun_
myPlotmyPlot
n_filterRemove sequences with non-identified bases (Ns) from a...
outputClean_outputClean_
plotAplotA
plotBplotB
plotCplotC
plotDplotD
plotEplotE
plotFplotF
plotGplotG
plotHplotH
plotIplotI
plotJplotJ
plotObjectsplotObjects Create the information required to construct the...
processingFunction_processingFunction_
qmean_filterFilter sequences by their average quality
random_lengthCreate a named object with random sequences and qualities
random_qualCreate random qualities for a given encoding
random_seqCreate random sequences
seq_filterRemove a set of sequences
seq_namesCreate sequences names
trim3q_filterFilter sequences with low quality in 3' tails
unique_filterRemove duplicated sequences in a FASTQ file
FastqCleaner documentation built on Nov. 8, 2020, 5:05 p.m.