seqLogo: Sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

AuthorOliver Bembom
Date of publicationNone
MaintainerOliver Bembom <oliver.bembom@gmail.com>
LicenseLGPL (>= 2)
Version1.40.0

View on Bioconductor

Functions

makePWM Man page
plot,pwm,ANY-method Man page
print,pwm-method Man page
pwm-class Man page
seqLogo Man page
show,pwm-method Man page
summary,pwm-method Man page

Files

seqLogo/DESCRIPTION
seqLogo/NAMESPACE
seqLogo/R
seqLogo/R/AllClasses.R seqLogo/R/AllGenerics.R seqLogo/R/pwm.R seqLogo/R/seqLogo.R
seqLogo/build
seqLogo/build/vignette.rds
seqLogo/inst
seqLogo/inst/Exfiles
seqLogo/inst/Exfiles/pwm1
seqLogo/inst/doc
seqLogo/inst/doc/seqLogo.R
seqLogo/inst/doc/seqLogo.Rnw
seqLogo/inst/doc/seqLogo.pdf
seqLogo/man
seqLogo/man/makePWM.Rd seqLogo/man/pwm-class.Rd seqLogo/man/seqLogo.Rd
seqLogo/vignettes
seqLogo/vignettes/seqLogo.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.