seqLogo: Sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")
AuthorOliver Bembom
Bioconductor views SequenceMatching
Date of publicationNone
MaintainerOliver Bembom <oliver.bembom@gmail.com>
LicenseLGPL (>= 2)
Version1.42.0

View on Bioconductor

Functions

makePWM Man page
plot,pwm,ANY-method Man page
print,pwm-method Man page
pwm-class Man page
seqLogo Man page
show,pwm-method Man page
summary,pwm-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R R/AllGenerics.R R/pwm.R R/seqLogo.R
build
build/vignette.rds
inst
inst/Exfiles
inst/Exfiles/pwm1
inst/doc
inst/doc/seqLogo.R
inst/doc/seqLogo.Rnw
inst/doc/seqLogo.pdf
man
man/makePWM.Rd man/pwm-class.Rd man/seqLogo.Rd
vignettes
vignettes/seqLogo.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.