seqLogo: Sequence logos for DNA sequence alignments

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seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author
Oliver Bembom
Date of publication
None
Maintainer
Oliver Bembom <oliver.bembom@gmail.com>
License
LGPL (>= 2)
Version
1.40.0

View on Bioconductor

Man pages

makePWM
Constructing a pwm object
pwm-class
Class "pwm"
seqLogo
Plot a sequence logo for a given position weight matrix

Files in this package

seqLogo/DESCRIPTION
seqLogo/NAMESPACE
seqLogo/R
seqLogo/R/AllClasses.R
seqLogo/R/AllGenerics.R
seqLogo/R/pwm.R
seqLogo/R/seqLogo.R
seqLogo/build
seqLogo/build/vignette.rds
seqLogo/inst
seqLogo/inst/Exfiles
seqLogo/inst/Exfiles/pwm1
seqLogo/inst/doc
seqLogo/inst/doc/seqLogo.R
seqLogo/inst/doc/seqLogo.Rnw
seqLogo/inst/doc/seqLogo.pdf
seqLogo/man
seqLogo/man/makePWM.Rd
seqLogo/man/pwm-class.Rd
seqLogo/man/seqLogo.Rd
seqLogo/vignettes
seqLogo/vignettes/seqLogo.Rnw