Visualising oligonucleotide patterns and sequence motifs occurrences across a large set of sequences centred at a common reference point and sorted by a user defined feature.
|Author||Vanja Haberle <firstname.lastname@example.org>|
|Date of publication||None|
|Maintainer||Vanja Haberle <email@example.com>|
getPatternOccurrenceList: Occurrence of sequence patterns in a set of ordered sequences
motifScanHits: Occurrence of motifs in a set of ordered sequences
motifScanScores: Motif scanning scores for a set of ordered sequences
plotMotifDensityMap: Plotting density maps of motif occurrence
plotMotifOccurrenceAverage: Plotting average profile of motif occurrence
plotMotifScanScores: Plotting heatmap of motif scanning scores
plotPatternDensityMap: Plotting density maps of sequence pattern occurrence
plotPatternOccurrenceAverage: Plotting average profile of sequence pattern occurrence
seqPattern-package: Visualising oligonucleotide patterns and motif occurences...
TBPpwm: Position-weight matrix for TATA-box binding protein motif
zebrafisPromoters: Zebrafish promoters sequences
zebrafisPromoters24h: Zebrafish promoters genomic coordinates