zebrafisPromoters24h: Zebrafish promoters genomic coordinates
In seqPattern: Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Description
Usage
Format
Value
References
Description
This is a data.frame object that contains genomic coordinates of
12078 promoters active in zebrafish Danio rerio embryos at 24 hours past
fertilisation. For each promoter additional information is provided, including
position of the dominant (most frequently used) TSS position, number of CAGE
tags per million supporting that promoter and the interquantile width of the
promoter (width of the central region containing >= 80% of the CAGE tags). The
data is taken from Nepal et al. Genome Research 2013, and it is intended
to be used for running examples from seqPattern package vignette.
Usage
1
Format
A data.frame object
Value
A data.frame object
References
Nepal et al. (2013) Dynamic regulation of the transcription initiation
landscape at single nucleotide resolution during vertebrate embryogenesis,
Genome Research 23(11):1938-1950.
seqPattern documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Format Value References
Description
This is a data.frame object that contains genomic coordinates of
12078 promoters active in zebrafish Danio rerio embryos at 24 hours past
fertilisation. For each promoter additional information is provided, including
position of the dominant (most frequently used) TSS position, number of CAGE
tags per million supporting that promoter and the interquantile width of the
promoter (width of the central region containing >= 80% of the CAGE tags). The
data is taken from Nepal et al. Genome Research 2013, and it is intended
to be used for running examples from seqPattern package vignette.
Usage
1 |
Format
A data.frame object
Value
A data.frame object
References
Nepal et al. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Research 23(11):1938-1950.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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