TBPpwm: Position-weight matrix for TATA-box binding protein motif
In seqPattern: Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Description
Usage
Format
Value
Description
This is a matrix object representing a position-weight matrix
(PWM) for TATA-box binding protein motif. The scores in the matrix correspond
to log2 ratio between probability of observing base b (rows) at position i
(columns) and background probability of base b. This PWM has been derived using
position frequency matrix from Jaspar database. It is intended to be used as an
input data in running examples from seqPattern package help pages.
Usage
1
Format
A matrix object
Value
A matrix object
seqPattern documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Format Value
Description
This is a matrix object representing a position-weight matrix
(PWM) for TATA-box binding protein motif. The scores in the matrix correspond
to log2 ratio between probability of observing base b (rows) at position i
(columns) and background probability of base b. This PWM has been derived using
position frequency matrix from Jaspar database. It is intended to be used as an
input data in running examples from seqPattern package help pages.
Usage
1 |
Format
A matrix object
Value
A matrix object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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