Files in seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/zebrafishPromoters24h.RData
data/zebrafishPromoters.RData
data/datalist
data/TBPpwm.RData
R/MotifScanningMethods.R
R/PlottingFunctions.R
R/PatternOccurrenceFunctions.R
R/MotifScanningFunctions.R
R/PlottingMethods.R
R/PatternOccurrenceMethods.R
vignettes/seqPattern.bib
vignettes/seqPattern.Rnw
vignettes/images/ConsensusDensity.jpg
vignettes/images/MetaoligonucleotideDensity.jpg
vignettes/images/DensitySchematic.pdf
vignettes/images/OligonucleotideDensity.jpg
vignettes/images/ColorPalettes.pdf
vignettes/images/OligonucleotideAverage.pdf
vignettes/images/MotifDensity.jpg
vignettes/images/MotifAverage.pdf
man/plotPatternDensityMap.Rd
man/zebrafisPromoters.Rd
man/TBPpwm.Rd
man/plotMotifOccurrenceAverage.Rd
man/plotMotifScanScores.Rd
man/zebrafisPromoters24h.Rd
man/motifScanScores.Rd
man/getPatternOccurrenceList.Rd
man/plotPatternOccurrenceAverage.Rd
man/motifScanHits.Rd
man/seqPattern-package.Rd
man/plotMotifDensityMap.Rd
tests/runTests.R
inst/doc/seqPattern.Rnw
inst/doc/seqPattern.pdf
inst/doc/seqPattern.R
inst/unitTests/test_PatternOccurrenceFunctions.R
inst/unitTests/test_MotifScanningMethods.R
inst/unitTests/test_PatternOccurrenceMethods.R
inst/unitTests/test_MotifScanningFunctions.R
