zebrafisPromoters: Zebrafish promoters sequences
In seqPattern: Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Description
Usage
Format
Value
References
Description
This is a DNAStringSet object that contains sequence of 1000
randomly selected promoters active in 24 hpf zebrafish Danio rerio
embryos. The data is taken from Nepal et al. Genome Research 2013, and
represents regions flanking 400 bp upstream and 600 bp downstream of the
dominant TSS detected by Cap analysis of gene expression (CAGE). It is intended
to be used as an input data in running examples from seqPattern
package help pages.
Usage
1
Format
A DNAStringSet object
Value
A DNAStringSet object
References
Nepal et al. (2013) Dynamic regulation of the transcription initiation
landscape at single nucleotide resolution during vertebrate embryogenesis,
Genome Research 23(11):1938-1950.
seqPattern documentation built on Nov. 8, 2020, 7:52 p.m.
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Description Usage Format Value References
Description
This is a DNAStringSet object that contains sequence of 1000
randomly selected promoters active in 24 hpf zebrafish Danio rerio
embryos. The data is taken from Nepal et al. Genome Research 2013, and
represents regions flanking 400 bp upstream and 600 bp downstream of the
dominant TSS detected by Cap analysis of gene expression (CAGE). It is intended
to be used as an input data in running examples from seqPattern
package help pages.
Usage
1 |
Format
A DNAStringSet object
Value
A DNAStringSet object
References
Nepal et al. (2013) Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis, Genome Research 23(11):1938-1950.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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