ETHZ-INS/scanMiRApp: scanMiR shiny application

A shiny interface to the scanMiR package. The application enables the scanning of transcripts and custom sequences for miRNA binding sites, the visualization of KdModels and binding results, as well as browsing predicted repression data. In addition contains the IndexedFst class for fast indexed reading of large GenomicRanges or data.frames, and some utilities for facilitating scans and identifying enriched miRNA-target pairs.

Getting started

Package details

Bioconductor views GUI SequenceMatching ShinyApps miRNA
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ETHZ-INS/scanMiRApp documentation built on March 16, 2024, 5:30 p.m.