scanMiRApp is a companion package to scanMiR.
ScanMiRAnnoclass, which encapsulates all the annotation information necessary for the app/wrappers in this package for a given species.
IndexedFstclass for fast indexed reading of large GenomicRanges or data.frames; this is used to enable fast random access to pre-compiled scans and aggregations without having to load them in memory.
scanMiRfunctions, for tasks like scanning or visualizing sites on the UTR of a given transcript, running transcriptome-wide scans, or finding enriched miRNA-target pairs.
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