dagLogo: dagLogo

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

AuthorJianhong Ou, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
Date of publicationNone
MaintainerJianhong Ou <jianhong.ou@umassmed.edu>
LicenseGPL (>=2)
Version1.12.0

View on Bioconductor

Files in this package

dagLogo/DESCRIPTION
dagLogo/NAMESPACE
dagLogo/NEWS
dagLogo/R
dagLogo/R/allclass.R dagLogo/R/buildBackgroundModel.R dagLogo/R/dagLogo.R dagLogo/R/fetchSequence.R dagLogo/R/formatSequence.R dagLogo/R/prepareProteome.R dagLogo/R/testDAU.R
dagLogo/build
dagLogo/build/vignette.rds
dagLogo/data
dagLogo/data/datalist
dagLogo/data/ecoli.proteome.rda
dagLogo/data/proteome.example.rda
dagLogo/data/seq.example.rda
dagLogo/inst
dagLogo/inst/doc
dagLogo/inst/doc/dagLogo.R
dagLogo/inst/doc/dagLogo.Rmd
dagLogo/inst/doc/dagLogo.html
dagLogo/inst/extdata
dagLogo/inst/extdata/HUMAN.fasta
dagLogo/inst/extdata/cap.fasta
dagLogo/inst/extdata/dagLogoTestData.csv
dagLogo/inst/extdata/grB.txt
dagLogo/inst/extdata/peptides4dagLogo.csv
dagLogo/inst/extdata/sample_seq.fasta
dagLogo/inst/extdata/script.txt
dagLogo/inst/extdata/test.data.txt
dagLogo/man
dagLogo/man/Proteome.Rd dagLogo/man/buildBackgroundModel.Rd dagLogo/man/colorsets.Rd dagLogo/man/dagBackground.Rd dagLogo/man/dagHeatmap.Rd dagLogo/man/dagLogo-package.Rd dagLogo/man/dagLogo.Rd dagLogo/man/dagPeptides.Rd dagLogo/man/ecoli.proteome.Rd dagLogo/man/fetchSequence.Rd dagLogo/man/formatSequence.Rd dagLogo/man/nameHash.Rd dagLogo/man/prepareProteome.Rd dagLogo/man/proteome.example.Rd dagLogo/man/seq.example.Rd dagLogo/man/testDAU.Rd dagLogo/man/testDAUresults.Rd
dagLogo/tests
dagLogo/tests/runTests.R
dagLogo/tests/testthat
dagLogo/tests/testthat/test_DAGtest.R
dagLogo/tests/testthat/test_buildBackgroundModel.R
dagLogo/tests/testthat/test_fetchSequence.R
dagLogo/vignettes
dagLogo/vignettes/bibliography.bib
dagLogo/vignettes/dagLogo.Rmd

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