ecoli.proteome: An object of 'Proteome-class' representing the _Escherichia...

Description Usage Format Details Source Examples

Description

A dataset containing the E. coli proteome.

Usage

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Format

An object of Proteome-class for Escherichia coli proteome. The format is: A list with one data frame and an character.

*‘proteome': ’data.frame': 13780 obs. of 4 variables *‘type': ’character': "UniProt" *‘species': ’character': "Escherichia coli"

The format of proteome is *'ENTREZ_GENE': a character vector, records entrez gene id *'SEQUENCE': a character vector, peptide sequences *'ID': a character vector, Uniprot ID *'LEN': a character vector, length of peptides

Details

used as an example dataset

Annotation data obtained by:

library(UniProt.ws)

taxId(UniProt.ws) <- 562

proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")

Source

http://www.uniprot.org/

Examples

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dagLogo documentation built on Dec. 5, 2020, 2 a.m.