ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Detect binding sites using motifs IUPAC sequence or bed coordinates and ChIP-seq experiments in bed or bam format. Combine/compare binding sites across experiments, tissues, or conditions. All normalization and differential steps are done using TMM-GLM method. Signal decomposition is done by setting motifs as the centers of the mixture of normal distribution curves.

Getting started

Package details

Bioconductor views ChIPSeq DifferentialPeakCalling Epigenetics SequenceMatching Sequencing Software
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.