Detect binding sites using motifs IUPAC sequence or bed coordinates and ChIP-seq experiments in bed or bam format. Combine/compare binding sites across experiments, tissues, or conditions. All normalization and differential steps are done using TMM-GLM method. Signal decomposition is done by setting motifs as the centers of the mixture of normal distribution curves.
|Bioconductor views||ChIPSeq DifferentialPeakCalling Epigenetics SequenceMatching Sequencing Software|
|Package repository||View on GitHub|
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