CompareMotifs2GivenRegions: Comparison motifs locations to a given regions set

In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Description

Comparison of motifs locations to user provided binding regions.

It returns this comparison to given user binding regions in terms of precision/recall.

Usage

CompareMotifs2GivenRegions(motifs, mismatchNumbers, bindingRegions)

Arguments

motifs	a vector of motif characters in nucleotide IUPAC format
mismatchNumbers	a vector Number of mismatches allowed to match with motifs
bindingRegions	granges of user provided binding regions

Value

A dataframe which includes precision recall values for each motif

ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.