generate1ntBedAlignment: Convert bam and bed files to 1 nucleotide bed

In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Description

Take alignment files in bam or bed fomat and convert them to 1 nucleotide bed file

Usage

generate1ntBedAlignment(InputFile, bedFile, format = "")

Arguments

InputFile	Original alignment file name
bedFile	Name of output 1nt bed file
format	alignment format and should be one of these: "BAMPE", "BAMSE", "BEDPE", "BEDSE"

Value

No return value

ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.