strongestMotif: Returns the motif with the highest count

In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Description

Gets motif locations and related short reads and returns the motif which include the highest number of short reads around it.

Usage

strongestMotif(motifLocations, readLocations, windowSize)

Arguments

motifLocations	A vector of motif locations
readLocations	A vector of 1nt short reads
windowSize	Window size around binding site. The total region would be 2*windowSize+1

Value

The strongest motif

ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.