fitKernelDensity: Fit a kernel density distribution to the obersever heuristic...
In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
Description
Usage
Arguments
Value
Description
This function gets heuristic distribution of short reads around
binding sites, total numer of short reads and window size as number of
neucleotid around binding sites.
It fits a kernel to the distribution and return the distribution
as output. The total sum of returned values is equal to one.
Usage
1
fitKernelDensity(heuristicDistribution, totalShortReads, windowSize)
Arguments
heuristicDistribution
Original short distribution
totalShortReads
Total number of short reads
windowSize
Window size around binding site. The total region would be
2*windowSize+1
Value
kernel returns fitted kernel distribution of short reads around
binding sites
ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.
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Description Usage Arguments Value
Description
This function gets heuristic distribution of short reads around binding sites, total numer of short reads and window size as number of neucleotid around binding sites.
It fits a kernel to the distribution and return the distribution as output. The total sum of returned values is equal to one.
Usage
1 | fitKernelDensity(heuristicDistribution, totalShortReads, windowSize)
|
Arguments
heuristicDistribution |
Original short distribution |
totalShortReads |
Total number of short reads |
windowSize |
Window size around binding site. The total region would be 2*windowSize+1 |
Value
kernel returns fitted kernel distribution of short reads around binding sites
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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