motifCount: count short reads around motifs for all ChIP-seq experiments

In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Description

count short reads related to each motif for all ChIPseq files both IP and Input.

Usage

motifCount(motifFile, chipSeq, windowSize, outputName, currentDir)

Arguments

motifFile	File contains motifs
chipSeq	dataframe of ChIP-seq 1nt alignment location
windowSize	Window size around binding site. The total region would be 2*windowSize+1
outputName	Name of the output table
currentDir	Directory for I/O operations

Value

No return value

ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.