computeFoldEnrichment: compute fold enrichment values for an experiment
In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
Description
Usage
Arguments
Value
Description
Open raw counts IP and Inut files and with given total counts
calculate Fold Enrichment values for the motifs
Usage
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computeFoldEnrichment(
ipCountFile,
inputCountFile,
ipTotalCount,
inputTotalCount,
outputName
)
Arguments
ipCountFile
File contains motifs count values for IP experiment
inputCountFile
File contains motifs count values for Input experiment
ipTotalCount
Total short reads number in IP experiment
inputTotalCount
Total short reads number in Input experiment
outputName
Name of the output table
Value
No return value
ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.
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Description Usage Arguments Value
Description
Open raw counts IP and Inut files and with given total counts calculate Fold Enrichment values for the motifs
Usage
1 2 3 4 5 6 7 | computeFoldEnrichment(
ipCountFile,
inputCountFile,
ipTotalCount,
inputTotalCount,
outputName
)
|
Arguments
ipCountFile |
File contains motifs count values for IP experiment |
inputCountFile |
File contains motifs count values for Input experiment |
ipTotalCount |
Total short reads number in IP experiment |
inputTotalCount |
Total short reads number in Input experiment |
outputName |
Name of the output table |
Value
No return value
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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