motifChipCount: count short reads related to each motif for a given ChIPseq...
In ManchesterBioinference/Motif2Site: Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
Description
Usage
Arguments
Value
Description
count 1nt short reads related to each motif for a given ChIPseq
file.
Usage
1
motifChipCount(motifFile, chipFile, windowSize, outputName)
Arguments
motifFile
File contains motifs
chipFile
ChIP-seq 1nt alignment locations in bed format
windowSize
Window size around binding site. The total region would be
2*windowSize+1
outputName
Name of the output table
Value
Total number of short reads in motif reagions
ManchesterBioinference/Motif2Site documentation built on Feb. 13, 2022, 2:03 a.m.
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Description Usage Arguments Value
Description
count 1nt short reads related to each motif for a given ChIPseq file.
Usage
1 | motifChipCount(motifFile, chipFile, windowSize, outputName)
|
Arguments
motifFile |
File contains motifs |
chipFile |
ChIP-seq 1nt alignment locations in bed format |
windowSize |
Window size around binding site. The total region would be 2*windowSize+1 |
outputName |
Name of the output table |
Value
Total number of short reads in motif reagions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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