GOFunction: GO-function: deriving biologcially relevant functions from statistically significant functions
Version 1.24.0

The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

AuthorJing Wang <jingwang.uestc@gmail.com>
Bioconductor views GO GeneSetEnrichment Microarray Pathways
Date of publicationNone
MaintainerJing Wang <jingwang.uestc@gmail.com>
LicenseGPL (>= 2)
Version1.24.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GOFunction")

Getting started

Package overview

Popular man pages

createGODAG: Creation of GO DAG stucture for statistically significant GO...
enrichmentFunction: Identification of statistically significant GO terms
GOFunction: main function of the GO-function package
interestGenes: Colon cancer differentially expressed genes
localRedundancy: Treating for local redundancy between GO terms with...
refGenes: Colon cancer background genes
showSigNodes: Drawing the GO DAG structure of statistically significant...
See all...

All man pages Function index File listing

Man pages

createGODAG: Creation of GO DAG stucture for statistically significant GO...
enrichmentFunction: Identification of statistically significant GO terms
globalRedundancy: Treating for glocal redundancy between GO terms which share...
GOFunction: main function of the GO-function package
GOFunction-package: GO-function: deriving biologically relevant functions from...
interestGenes: Colon cancer differentially expressed genes
localRedundancy: Treating for local redundancy between GO terms with...
refGenes: Colon cancer background genes
showSigNodes: Drawing the GO DAG structure of statistically significant...

Functions

GOFunction Man page Source code
GOFunction-package Man page
createGODAG Man page Source code
enrichmentFunction Man page Source code
globalRedundancy Man page Source code
interestGenes Man page
localRedundancy Man page Source code
onLoad Source code
refGenes Man page
showSigNodes Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/GOFunction.R
R/createGODAG.R
R/enrichmentFunction.R
R/globalRedundancy.R
R/localRedundancy.R
R/showSigNodes.R
R/zzz.R
build
build/vignette.rds
data
data/exampledata.rda
inst
inst/doc
inst/doc/GOFunction.R
inst/doc/GOFunction.Rnw
inst/doc/GOFunction.pdf
man
man/GOFunction-package.Rd
man/GOFunction.Rd
man/createGODAG.Rd
man/enrichmentFunction.Rd
man/globalRedundancy.Rd
man/interestGenes.Rd
man/localRedundancy.Rd
man/refGenes.Rd
man/showSigNodes.Rd
vignettes
vignettes/GOFunction.Rnw
vignettes/GOFunction.bib
vignettes/sigTerm.jpg
GOFunction documentation built on May 20, 2017, 10:06 p.m.

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