GOFunction: GO-function: deriving biologcially relevant functions from statistically significant functions

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The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

Author
Jing Wang <jingwang.uestc@gmail.com>
Date of publication
None
Maintainer
Jing Wang <jingwang.uestc@gmail.com>
License
GPL (>= 2)
Version
1.22.0

View on Bioconductor

Man pages

createGODAG
Creation of GO DAG stucture for statistically significant GO...
enrichmentFunction
Identification of statistically significant GO terms
globalRedundancy
Treating for glocal redundancy between GO terms which share...
GOFunction
main function of the GO-function package
GOFunction-package
GO-function: deriving biologically relevant functions from...
interestGenes
Colon cancer differentially expressed genes
localRedundancy
Treating for local redundancy between GO terms with...
refGenes
Colon cancer background genes
showSigNodes
Drawing the GO DAG structure of statistically significant...

Files in this package

GOFunction/DESCRIPTION
GOFunction/NAMESPACE
GOFunction/R
GOFunction/R/GOFunction.R
GOFunction/R/createGODAG.R
GOFunction/R/enrichmentFunction.R
GOFunction/R/globalRedundancy.R
GOFunction/R/localRedundancy.R
GOFunction/R/showSigNodes.R
GOFunction/R/zzz.R
GOFunction/build
GOFunction/build/vignette.rds
GOFunction/data
GOFunction/data/exampledata.rda
GOFunction/inst
GOFunction/inst/doc
GOFunction/inst/doc/GOFunction.R
GOFunction/inst/doc/GOFunction.Rnw
GOFunction/inst/doc/GOFunction.pdf
GOFunction/man
GOFunction/man/GOFunction-package.Rd
GOFunction/man/GOFunction.Rd
GOFunction/man/createGODAG.Rd
GOFunction/man/enrichmentFunction.Rd
GOFunction/man/globalRedundancy.Rd
GOFunction/man/interestGenes.Rd
GOFunction/man/localRedundancy.Rd
GOFunction/man/refGenes.Rd
GOFunction/man/showSigNodes.Rd
GOFunction/vignettes
GOFunction/vignettes/GOFunction.Rnw
GOFunction/vignettes/GOFunction.bib
GOFunction/vignettes/sigTerm.jpg