enrichmentFunction: Identification of statistically significant GO terms

In GOFunction: GO-function: deriving biologcially relevant functions from statistically significant functions

Description

Using the hypergenomic distribution test and FDR correction procedure, this function can identify a set of statistically significant GO terms.

Arguments

annRef	annRef is the annotated reference genes and their annotated terms.
annInterest	annInterest is the annotated interesting genes and their annotated terms.
method	method is the fdr method. GO-function provides three p value correction methods: "bonferroni", "BH" and "BY". The default is "BY".
fdrth	fdrth is the fdr cutoff to identify statistically significant GO terms. The default is 0.05.

Value

The function returns a list contained two values: The first value is a table contained the information of all statistically significant terms under a FDR control level and the second value is a table contained the information of all annotated GO terms.

Author(s)

Jing Wang

See Also

GOFunction

GOFunction documentation built on April 28, 2020, 6:55 p.m.