GOpro: Find the most characteristic gene ontology terms for groups of human genes
Version 1.2.0

Find the most characteristic gene ontology terms for groups of human genes. This package was created as a part of the thesis which was developed under the auspices of MI^2 Group (http://mi2.mini.pw.edu.pl/, https://github.com/geneticsMiNIng).

Browse man pages Browse package API and functions Browse package files

AuthorLidia Chrabaszcz
Bioconductor views Annotation Clustering GO GeneExpression GeneSetEnrichment MultipleComparison
Date of publicationNone
MaintainerLidia Chrabaszcz <chrabaszcz.lidia@gmail.com>
LicenseGPL-3
Version1.2.0
URL https://github.com/mi2-warsaw/GOpro
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("GOpro")

Man pages

exrtcga: Expressions of human genes.
findGO: Find top Gene Ontology terms for given genes.
GOpro: GOpro: find the most characteristic gene ontology terms for...

Functions

GO Source code
GOpro Man page
GOpro-package Man page
IsConflict Source code
TukeyCore Source code
aovTopTest Source code
clustering Source code
exrtcga Man page
extendGO Source code
extendoutput Source code
findAllGOs Source code
findGO Man page Source code
findTopGOs Source code
fisher_test Source code
groupByProfiles Source code
groupByTukey Source code
makeNames Source code
onUnload Source code
ontologyOver Source code
ordering Source code
output Source code
plotg Source code
print.genecluster Source code
printGO Source code
tukeyHSDTest Source code
unbundleCluster Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/GO.R
R/GOpro.R
R/RcppExports.R
R/aovTopTest.R
R/clustering.R
R/data.R
R/extendGO.R
R/findAllGOs.R
R/findGO.R
R/findTopGOs.R
R/groupByProfiles.R
R/groupByTukey.R
R/ontologyOver.R
R/plotgenecluster.R
R/printgenecluster.R
R/tukeyHSDTest.R
R/unbundleCluster.R
R/unload.R
build
build/vignette.rds
data
data/exrtcga.RData
inst
inst/doc
inst/doc/GOpro_vignette.R
inst/doc/GOpro_vignette.Rmd
inst/doc/GOpro_vignette.html
man
man/GOpro.Rd
man/exrtcga.Rd
man/findGO.Rd
src
src/GOpro_init.c
src/RcppExports.cpp
src/fisher.cpp
tests
tests/testthat
tests/testthat.R
tests/testthat/test-GOpro.R
vignettes
vignettes/GOpro_vignette.Rmd
GOpro documentation built on May 20, 2017, 10:27 p.m.