BgeeDB: Annotation and gene expression data retrieval from Bgee database

A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.

AuthorAndrea Komljenovic [aut, cre], Julien Roux [aut, cre]
Date of publicationNone
MaintainerAndrea Komljenovic <andreakomljenovic@gmail.com>, Frederic Bastian <bgee@sib.swiss>
LicenseGPL-2
Version2.0.0

View on Bioconductor

Files

BgeeDB/DESCRIPTION
BgeeDB/NAMESPACE
BgeeDB/NEWS
BgeeDB/R
BgeeDB/R/Bgee.R BgeeDB/R/formatData.R BgeeDB/R/getAnnotation.R BgeeDB/R/getData.R BgeeDB/R/listBgeeRelease.R BgeeDB/R/listBgeeSpecies.R BgeeDB/R/loadTopAnatData.R BgeeDB/R/makeTable.R BgeeDB/R/topAnat.R
BgeeDB/README.md
BgeeDB/build
BgeeDB/build/vignette.rds
BgeeDB/inst
BgeeDB/inst/CITATION
BgeeDB/inst/NEWS.Rd
BgeeDB/inst/doc
BgeeDB/inst/doc/BgeeDB_Manual.R
BgeeDB/inst/doc/BgeeDB_Manual.Rmd
BgeeDB/inst/doc/BgeeDB_Manual.html
BgeeDB/man
BgeeDB/man/Bgee-class.Rd BgeeDB/man/formatData.Rd BgeeDB/man/getAnnotation.Rd BgeeDB/man/getData.Rd BgeeDB/man/listBgeeRelease.Rd BgeeDB/man/listBgeeSpecies.Rd BgeeDB/man/loadTopAnatData.Rd BgeeDB/man/makeTable.Rd BgeeDB/man/topAnat.Rd
BgeeDB/tests
BgeeDB/tests/testthat
BgeeDB/tests/testthat.R
BgeeDB/tests/testthat/test_format_data.R
BgeeDB/tests/testthat/test_list_annotation_output.R
BgeeDB/tests/testthat/test_listspecies_output.R
BgeeDB/tests/testthat/test_loadTopAnatData.R
BgeeDB/tests/testthat/test_loading_data_Bgee.R
BgeeDB/tests/testthat/test_loading_separate_experiment.R
BgeeDB/tests/testthat/test_topAnat.R
BgeeDB/vignettes
BgeeDB/vignettes/BgeeDB_Manual.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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