getAnnotation: Retrieve Bgee experiments annotation for targeted species and...
In BgeeDB: Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/getAnnotation.R
Description
This function loads the annotation of experiments and samples of quantitative expression datasets (rna_seq, affymetrix) that are available from Bgee.
Usage
1
getAnnotation(myBgeeObject)
Arguments
myBgeeObject
A Reference Class Bgee object, notably specifying the targeted species and data type.
Value
A list of two elements, including a data frame of the annotation of experiments for chosen species (field "experiment.annotation") and a data frame of the annotation of chips/libraries from these experiments (field "sample.annotation").
Author(s)
Andrea Komljenovic and Julien Roux.
Examples
1
2
3
4
{
bgee <- Bgee$new(species = "Mus_musculus", dataType = "rna_seq")
myAnnotation <- getAnnotation(bgee)
}
BgeeDB documentation built on Nov. 8, 2020, 8:21 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/getAnnotation.R
Description
This function loads the annotation of experiments and samples of quantitative expression datasets (rna_seq, affymetrix) that are available from Bgee.
Usage
1 | getAnnotation(myBgeeObject)
|
Arguments
myBgeeObject |
A Reference Class Bgee object, notably specifying the targeted species and data type. |
Value
A list of two elements, including a data frame of the annotation of experiments for chosen species (field "experiment.annotation") and a data frame of the annotation of chips/libraries from these experiments (field "sample.annotation").
Author(s)
Andrea Komljenovic and Julien Roux.
Examples
1 2 3 4 | {
bgee <- Bgee$new(species = "Mus_musculus", dataType = "rna_seq")
myAnnotation <- getAnnotation(bgee)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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