GOSim: Computation of functional similarities between GO terms and gene products; GO enrichment analysis

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

AuthorHolger Froehlich <frohlich@bit.uni-bonn.de>
Date of publicationNone
MaintainerHolger Froehlich <frohlich@bit.uni-bonn.de>
LicenseGPL (>= 2)
Version1.12.0

View on Bioconductor

Functions

analyzeCluster Man page
calc.diffusion.kernel Man page
calcICs Man page
calcTermSim Man page
classificationModel_dme Man page
classificationModelSignalTrans_dme Man page
classificationModelSignalTrans_hsa Man page
evaluateClustering Man page
filterGO Man page
getAncestors Man page
getChildren Man page
getDensityFactor Man page
getDepthFactor Man page
getDisjAnc Man page
getDisjCommAnc Man page
getDisjCommAncSim Man page
getEnrichedSim Man page
getGeneFeatures Man page
getGeneFeaturesPrototypes Man page
getGeneSim Man page
getGeneSimPrototypes Man page
getGOGraph Man page
getGOGraphsGenes Man page
getGOInfo Man page
getGSim Man page
getMinimumSubsumer Man page
getOffsprings Man page
getParents Man page
getTermSim Man page
GOenrichment Man page
GOGraph Man page
IC Man page
ICshumanBPall Man page
ICshumanCCall Man page
ICshumanMFall Man page
initialize Man page
internal Man page
load.diffusion.kernel Man page
norm Man page
pca Man page
precomputeTermSims Man page
selectPrototypes Man page
setEnrichmentFactors Man page
setEvidenceLevel Man page
setOntology Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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