filterGO: Filter GO.

Description Usage Arguments Value Note Author(s) See Also Examples

View source: R/geneSimilarity.R

Description

Filter out genes from a list not mapping to the actual ontology. Genes not mapping to the currently set ontology ("BP","MF","CC") and not having one of the predefined evidence codes (default is to use all evidence codes) are removed.

Usage

1
filterGO(genelist)

Arguments

genelist

character vector of Entrez gene IDs

Value

List with items

"genename"

gene ID

"annotation"

character vector of GO terms mapping to the gene within the actual ontology

Note

The result depends on the currently set ontology. IMPORTANT: The result refers to the GO library that was used to precompute the information contence of GO terms.

Author(s)

Holger Froehlich

See Also

setOntology, setEvidenceLevel, getGOInfo, calcICs

Examples

1
	filterGO(c("12345","4559"))	

GOSim documentation built on Nov. 1, 2018, 2:26 a.m.